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"""Annif backend using a SVM classifier""" |
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import os.path |
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import joblib |
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import numpy as np |
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import scipy.special |
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from sklearn.svm import LinearSVC |
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import annif.util |
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from annif.suggestion import SubjectSuggestion, ListSuggestionResult |
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from annif.exception import NotInitializedException, NotSupportedException |
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from . import backend |
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from . import mixins |
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class SVCBackend(mixins.TfidfVectorizerMixin, backend.AnnifBackend): |
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"""Support vector classifier backend for Annif""" |
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name = "svc" |
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needs_subject_index = True |
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# defaults for uninitialized instances |
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_model = None |
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MODEL_FILE = 'svc-model.gz' |
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DEFAULT_PARAMETERS = { |
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'min_df': 1, |
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'ngram': 1 |
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} |
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def default_params(self): |
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params = backend.AnnifBackend.DEFAULT_PARAMETERS.copy() |
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params.update(self.DEFAULT_PARAMETERS) |
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return params |
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def _initialize_model(self): |
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if self._model is None: |
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path = os.path.join(self.datadir, self.MODEL_FILE) |
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self.debug('loading model from {}'.format(path)) |
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if os.path.exists(path): |
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self._model = joblib.load(path) |
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else: |
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raise NotInitializedException( |
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'model {} not found'.format(path), |
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backend_id=self.backend_id) |
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def initialize(self): |
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self.initialize_vectorizer() |
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self._initialize_model() |
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def _train(self, corpus, params): |
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if corpus == 'cached': |
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raise NotSupportedException( |
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'SVC backend does not support reuse of cached training data.') |
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if corpus.is_empty(): |
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raise NotSupportedException( |
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'Cannot train SVC project with no documents') |
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input = [] |
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classes = [] |
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for doc in corpus.documents: |
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input.append(doc.text) |
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classes.append(doc.uris[0]) |
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vecparams = {'min_df': int(params['min_df']), |
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'tokenizer': self.project.analyzer.tokenize_words, |
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'ngram_range': (1, int(params['ngram']))} |
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veccorpus = self.create_vectorizer(input, vecparams) |
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self.info('creating classifier') |
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self._model = LinearSVC() |
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self._model.fit(veccorpus, classes) |
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annif.util.atomic_save(self._model, |
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self.datadir, |
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self.MODEL_FILE, |
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method=joblib.dump) |
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def _suggest(self, text, params): |
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self.debug('Suggesting subjects for text "{}..." (len={})'.format( |
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text[:20], len(text))) |
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vector = self.vectorizer.transform([text]) |
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if vector.nnz == 0: # All zero vector, empty result |
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return ListSuggestionResult([]) |
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confidences = self._model.decision_function(vector)[0] |
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# convert to 0..1 score range using logistic function |
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scores = scipy.special.expit(confidences) |
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results = [] |
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limit = int(params['limit']) |
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for class_id in np.argsort(scores)[::-1][:limit]: |
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class_uri = self._model.classes_[class_id] |
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subject_id = self.project.subjects.by_uri(class_uri) |
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if subject_id is not None: |
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uri, label, notation = self.project.subjects[subject_id] |
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results.append(SubjectSuggestion( |
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uri=uri, |
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label=label, |
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notation=notation, |
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score=scores[class_id])) |
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return ListSuggestionResult(results) |
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NatLibFi /
Annif
