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"""Annif backend using the Omikuji classifier""" |
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import omikuji |
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import os.path |
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import shutil |
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import annif.util |
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from annif.suggestion import SubjectSuggestion, ListSuggestionResult |
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from annif.exception import NotInitializedException, NotSupportedException, \ |
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OperationFailedException |
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from . import backend |
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from . import mixins |
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View Code Duplication |
class OmikujiBackend(mixins.TfidfVectorizerMixin, backend.AnnifBackend): |
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"""Omikuji based backend for Annif""" |
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name = "omikuji" |
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# defaults for uninitialized instances |
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_model = None |
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TRAIN_FILE = 'omikuji-train.txt' |
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MODEL_FILE = 'omikuji-model' |
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DEFAULT_PARAMETERS = { |
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'min_df': 1, |
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'ngram': 1, |
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'cluster_balanced': True, |
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'cluster_k': 2, |
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'max_depth': 20, |
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'collapse_every_n_layers': 0, |
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} |
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def default_params(self): |
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params = backend.AnnifBackend.DEFAULT_PARAMETERS.copy() |
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params.update(self.DEFAULT_PARAMETERS) |
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return params |
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def _initialize_model(self): |
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if self._model is None: |
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path = os.path.join(self.datadir, self.MODEL_FILE) |
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self.debug('loading model from {}'.format(path)) |
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if os.path.exists(path): |
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try: |
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self._model = omikuji.Model.load(path) |
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except RuntimeError: |
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raise OperationFailedException( |
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"Omikuji models trained on Annif versions older than " |
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"0.56 cannot be loaded. Please retrain your project.") |
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else: |
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raise NotInitializedException( |
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'model {} not found'.format(path), |
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backend_id=self.backend_id) |
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def initialize(self, parallel=False): |
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self.initialize_vectorizer() |
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self._initialize_model() |
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def _create_train_file(self, veccorpus, corpus): |
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self.info('creating train file') |
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path = os.path.join(self.datadir, self.TRAIN_FILE) |
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with open(path, 'w', encoding='utf-8') as trainfile: |
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# Extreme Classification Repository format header line |
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# We don't yet know the number of samples, as some may be skipped |
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print('00000000', |
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len(self.vectorizer.vocabulary_), |
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len(self.project.subjects), |
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file=trainfile) |
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n_samples = 0 |
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for doc, vector in zip(corpus.documents, veccorpus): |
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subject_ids = [str(subject_id) |
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for subject_id in doc.subject_set] |
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feature_values = ['{}:{}'.format(col, vector[row, col]) |
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for row, col in zip(*vector.nonzero())] |
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if not subject_ids or not feature_values: |
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continue # noqa |
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print(','.join(subject_ids), |
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' '.join(feature_values), |
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file=trainfile) |
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n_samples += 1 |
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# replace the number of samples value at the beginning |
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trainfile.seek(0) |
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print('{:08d}'.format(n_samples), end='', file=trainfile) |
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def _create_model(self, params, jobs): |
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train_path = os.path.join(self.datadir, self.TRAIN_FILE) |
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model_path = os.path.join(self.datadir, self.MODEL_FILE) |
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hyper_param = omikuji.Model.default_hyper_param() |
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hyper_param.cluster_balanced = annif.util.boolean( |
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params['cluster_balanced']) |
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hyper_param.cluster_k = int(params['cluster_k']) |
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hyper_param.max_depth = int(params['max_depth']) |
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hyper_param.collapse_every_n_layers = int( |
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params['collapse_every_n_layers']) |
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self._model = omikuji.Model.train_on_data( |
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train_path, hyper_param, jobs or None) |
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if os.path.exists(model_path): |
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shutil.rmtree(model_path) |
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self._model.save(os.path.join(self.datadir, self.MODEL_FILE)) |
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def _train(self, corpus, params, jobs=0): |
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if corpus != 'cached': |
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if corpus.is_empty(): |
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raise NotSupportedException( |
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'Cannot train omikuji project with no documents') |
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input = (doc.text for doc in corpus.documents) |
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vecparams = {'min_df': int(params['min_df']), |
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'tokenizer': self.project.analyzer.tokenize_words, |
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'ngram_range': (1, int(params['ngram']))} |
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veccorpus = self.create_vectorizer(input, vecparams) |
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self._create_train_file(veccorpus, corpus) |
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else: |
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self.info("Reusing cached training data from previous run.") |
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self._create_model(params, jobs) |
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def _suggest(self, text, params): |
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self.debug('Suggesting subjects for text "{}..." (len={})'.format( |
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text[:20], len(text))) |
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vector = self.vectorizer.transform([text]) |
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if vector.nnz == 0: # All zero vector, empty result |
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return ListSuggestionResult([]) |
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feature_values = [(col, vector[row, col]) |
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for row, col in zip(*vector.nonzero())] |
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results = [] |
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limit = int(params['limit']) |
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for subj_id, score in self._model.predict(feature_values, top_k=limit): |
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results.append(SubjectSuggestion( |
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subject_id=subj_id, |
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score=score)) |
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return ListSuggestionResult(results) |
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NatLibFi /
Annif
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