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                """Clases for supporting document corpora"""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    3
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                import glob  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    4
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                import os.path  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    5
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                import re  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    6
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                import gzip  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    7
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                import annif.util  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    8
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                from itertools import islice  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    9
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                from .types import DocumentCorpus  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    10
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                from .subject import SubjectSet  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    12
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                logger = annif.logger  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    13
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                    15
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                class DocumentDirectory(DocumentCorpus):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    16
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                    """A directory of files as a full text document corpus"""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    17
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                    18
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                    def __init__(self, path, require_subjects=False):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    19
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                        self.path = path  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    20
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                        self.require_subjects = require_subjects  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    21
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                    22
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                    def __iter__(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    23
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                        """Iterate through the directory, yielding tuples of (docfile,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    24
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                        subjectfile) containing file paths. If there is no key file and  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        require_subjects is False, the subjectfile will be returned as None."""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    27
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                        for filename in sorted(glob.glob(os.path.join(self.path, '*.txt'))):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            tsvfilename = re.sub(r'\.txt$', '.tsv', filename)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            if os.path.exists(tsvfilename):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                yield (filename, tsvfilename)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                continue  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    32
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                            keyfilename = re.sub(r'\.txt$', '.key', filename)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            if os.path.exists(keyfilename):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                yield (filename, keyfilename)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                continue  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    36
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                            if not self.require_subjects:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    37
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                                yield (filename, None)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    39
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                    @property  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    40
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                    def documents(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    41
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                        for docfilename, keyfilename in self:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    42
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                            with open(docfilename, errors='replace',  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    43
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                                      encoding='utf-8-sig') as docfile:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    44
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                                text = docfile.read()  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    45
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                            with open(keyfilename, encoding='utf-8-sig') as keyfile:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    46
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                                subjects = SubjectSet.from_string(keyfile.read())  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    47
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                            yield self._create_document(text=text,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                                        uris=subjects.subject_uris,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    49
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                                                        labels=subjects.subject_labels)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    51
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                    52
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                class DocumentFile(DocumentCorpus):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    53
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                    """A TSV file as a corpus of documents with subjects"""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    55
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                    def __init__(self, path):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    56
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                        self.path = path  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    58
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                    @property  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    59
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                    def documents(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    60
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                        if self.path.endswith('.gz'): | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    61
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                            opener = gzip.open  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        else:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            opener = open  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        with opener(self.path, mode='rt', encoding='utf-8-sig') as tsvfile:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            for line in tsvfile:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                yield from self._parse_tsv_line(line)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    68
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                    def _parse_tsv_line(self, line):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        if '\t' in line:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    70
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                            text, uris = line.split('\t', maxsplit=1) | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            subjects = [annif.util.cleanup_uri(uri)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    72
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                                        for uri in uris.split()]  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            yield self._create_document(text=text,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                                        uris=subjects,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                                                        labels=[])  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    76
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                        else:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                            logger.warning('Skipping invalid line (missing tab): "%s"', | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    78
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                                           line.rstrip())  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    80
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                    81
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                class DocumentList(DocumentCorpus):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    82
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                    """A document corpus based on a list of other iterable of Document  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    83
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                    objects"""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    85
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                    def __init__(self, documents):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    86
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                        self._documents = documents  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    87
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                    88
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                    @property  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    89
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                    def documents(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        yield from self._documents  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    92
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                    93
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                class TruncatingDocumentCorpus(DocumentCorpus):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    94
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                    """A document corpus that wraps another document corpus but truncates the  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    documents to a given length"""  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    97
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                    def __init__(self, corpus, limit):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    98
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                        self._orig_corpus = corpus  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                        self._limit = limit  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    100
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                    101
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                    @property  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    102
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                    def documents(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    103
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                        for doc in self._orig_corpus.documents:  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    104
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                            yield self._create_document(text=doc.text[:self._limit],  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    105
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                                                        uris=doc.uris,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    106
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                                                        labels=doc.labels)  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    107
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                    108
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                    109
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                class LimitingDocumentCorpus(DocumentCorpus):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    110
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                    """A document corpus that wraps another document corpus but limits the  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    111
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                    number of documents to a given limit"""  | 
            
            
                                                                                                            
                                                                
            
                                    
            
            
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                    112
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                    113
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                    def __init__(self, corpus, docs_limit):  | 
            
            
                                                                        
                            
            
                                    
            
            
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                    114
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                        self._orig_corpus = corpus  | 
            
            
                                                                        
                            
            
                                    
            
            
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                    115
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                        self.docs_limit = docs_limit  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    116
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                    117
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                    @property  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    118
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                    def documents(self):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    119
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                        for doc in islice(self._orig_corpus.documents, self.docs_limit):  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    120
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                            yield self._create_document(text=doc.text,  | 
            
            
                                                                                                            
                            
            
                                    
            
            
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                    121
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                                                        uris=doc.uris,  | 
            
            
                                                                                                            
                                                                
            
                                    
            
            
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                    122
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                                                        labels=doc.labels)  | 
            
            
                                                        
            
                                    
            
            
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                    123
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