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# Copyright 2014 Diamond Light Source Ltd. |
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# |
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# Licensed under the Apache License, Version 2.0 (the "License"); |
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# you may not use this file except in compliance with the License. |
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# You may obtain a copy of the License at |
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# |
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# http://www.apache.org/licenses/LICENSE-2.0 |
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# |
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# Unless required by applicable law or agreed to in writing, software |
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# distributed under the License is distributed on an "AS IS" BASIS, |
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
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# See the License for the specific language governing permissions and |
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# limitations under the License. |
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""" |
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.. module:: framework_citations_tools |
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:platform: Unix |
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:synopsis: Contains all framework citations. |
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.. moduleauthor:: Jessica Verschoyle <[email protected]> |
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""" |
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from savu.plugins.plugin_tools import PluginTools |
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class FrameworkCitationsTools(PluginTools): |
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"""Framework citation text""" |
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def citation(self): |
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""" |
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The Savu online repository |
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bibtex: |
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@software{nicola_wadeson_2021_5095360, |
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author={Nicola Wadeson and |
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Jessica Verschoyle and |
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Daniil Kazantsev and |
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Mark Basham and |
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Dimitar Tasev and |
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Nghia T. Vo and |
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Tom Schoonjans and |
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Emilio PJ and |
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mjn19172 and |
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Srikanth Nagella and |
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Dan Nixon and |
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mstorm and |
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Matthew Frost and |
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cgowling and |
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Robert C Atwood and |
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Gabryel Mason-Williams and |
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Jacob Filik and |
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Katrin Leinweber and |
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Making GitHub Delicious. and |
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The Gitter Badger and |
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Willem Jan Palenstijn and |
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Zdenek}, |
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title={DiamondLightSource/Savu: Version 4.0}, |
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month=jul, |
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year=2021, |
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publisher={Zenodo}, |
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version={v4.0}, |
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doi={10.5281/zenodo.5095360}, |
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url={https://doi.org/10.5281/zenodo.5095360} |
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} |
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short_name_article: Savu repository |
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doi: 10.5281/zenodo.5095360 |
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""" |
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def citation1(self): |
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""" |
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The Savu framework design is described in this paper. |
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bibtex: |
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@article{wadeson2016savu, |
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title={Savu: A Python-based, MPI Framework for Simultaneous |
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Processing of Multiple, N-dimensional, Large Tomography |
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Datasets}, |
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author={Wadeson, Nicola and Basham, Mark}, |
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journal={arXiv preprint arXiv:1610.08015}, |
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year={2016} |
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} |
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endnote: |
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%0 Journal Article |
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%T Savu: A Python-based, MPI Framework for Simultaneous Processing |
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of Multiple, N-dimensional, Large Tomography Datasets |
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%A Wadeson, Nicola |
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%A Basham, Mark |
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%J arXiv preprint arXiv:1610.08015 |
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%D 2016 |
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short_name_article: Savu |
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""" |
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def citation2(self): |
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""" |
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Savu uses parallel HDF5 as a backend. |
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bibtex: |
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@ONLINE{hdf5, |
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author = {{The HDF Group}}, |
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title = '{Hierarchical Data Format, version 5}', |
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year = {1997-2016}, |
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note = {/HDF5/}, |
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} |
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endnote: |
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%0 Journal Article |
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%T {Hierarchical Data Format, version 5} |
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%A HDF Group |
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%D 2014 |
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short_name_article: Hdf5 |
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""" |
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def citation3(self): |
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""" |
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HDF5 uses the Message Passing Interface standard for interprocess |
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communication |
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bibtex: |
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@article{walker1996mpi, |
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title={MPI: a standard message passing interface}, |
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author={Walker, David W and Dongarra, Jack J}, |
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journal={Supercomputer}, |
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volume={12}, |
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pages={56--68}, |
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year={1996}, |
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publisher={ASFRA BV} |
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} |
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endnote: |
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%0 Journal Article |
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%T MPI: a standard message passing interface |
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%A Walker, David W |
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%A Dongarra, Jack J |
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%J Supercomputer |
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%V 12 |
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%P 56-68 |
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%@ 0168-7875 |
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%D 1996 |
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%I ASFRA BV |
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short_name_article: MPI |
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""" |
DiamondLightSource /
Savu
