doc.source.conf

Complexity

Total Complexity

3

Size/Duplication

Total Lines	381
Duplicated Lines	0 %

Importance

Changes

0

2 Functions

Rating	Name	Duplication	Size	Complexity
A	setup()	0	7	1
A	rstjinja()	0	12	2

# -*- coding: utf-8 -*-
#
# Savu documentation build configuration file, created by
# sphinx-quickstart on Tue Sep 16 10:25:51 2014.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import os
import sys

from unittest import mock

# Mock imports instead of full environment in readthedocs
MOCK_MODULES = ["numpy",
                "pytest",
                "mpi4py",
                "astra",
                "h5py",
                "pandas"
                ]

for mod_name in MOCK_MODULES:
    sys.modules[mod_name] = mock.Mock()

autodoc_mock_imports = [
    "ccpi",
    "dezing", # Dezinger Deprecated
    "dosna",
    "fabio",
    "flupy",
    "GeodisTK",
    "larix",
    "morphsnakes", # MaskInitialiser MorphSnakes
    "mrcfile",
    "pmacparser", # StageMotion
    "peakutils",
    "pyfftw",
    "pynvml",
    "PyMca5",
    "ptypy",
    "pywt",
    "pyFAI",
    "ral_nlls",
    "scipy",
    "skimage",
    "sklearn",
    "speckle_matching",
    "setup",
    "tifffile",
    "tomopy",
    "tomobar",
    "tomophantom",
    "xraylib",
    ]

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.

sys.path.insert(0, os.path.abspath('../..'))
sys.path.insert(0, os.path.abspath('../../savu'))

import savu

print(sys.path)
# -- General configuration -----------------------------------------------------

keep_warnings=True

#=================== Auto-generate APIs ==============================
#import subprocess
#
#python create_autosummary.py api autosummary.rst
##python create_autosummary.py api_plugin_dev dev_autosummary.rst
#DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
#echo $DIR
#export SPHINX_APIDOC_OPTIONS='members,private-members,undoc-members,show-inheritance'
#sphinx-apidoc -fMeTP $DIR/../ -o $DIR/source/api
#export SPHINX_APIDOC_OPTIONS='members,undoc-members,noindex'
#sphinx-apidoc -feT $DIR/../ -o $DIR/source/api_plugin_dev
#python create_dev_autosummary.py
#sphinx-build -a -E -j 2 -b html $DIR/source/ $DIR/build/
#
#
#def run_apidoc(_):
#    # get all module directories here
#    modules = ['a_list_of',
#               'python_module_directories',
#               'in_your_project']
#    for module in modules:
#        cur_dir = os.path.abspath(os.path.dirname(__file__))
#        output_path = os.path.join(cur_dir, module, 'doc')
#        cmd_path = 'sphinx-apidoc'
#        if hasattr(sys, 'real_prefix'):  # Check to see if we are in a virtualenv
#            # If we are, assemble the path manually
#            cmd_path = os.path.abspath(os.path.join(sys.prefix, 'bin', 'sphinx-apidoc'))
#        subprocess.check_call([cmd_path, '-e', '-o', output_path, module, '--force'])
#
#def setup(app):
#    app.connect('builder-inited', run_apidoc)
#=================== Auto-generate APIs ==============================

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    # Generates api files
    "sphinx.ext.autodoc",
    # Generates a short summary from docstring
    "sphinx.ext.autosummary",
    # Allows parsing of google style docstrings
    "sphinx.ext.napoleon",
    # Add links to highlighted source code
    "sphinx.ext.viewcode",
    # Documents command line tools with argparser library
    "sphinxarg.ext",
    # Allows a grid layout and dropdown boxes
    "sphinx_panels",
]
autosummary_generate = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'Savu'
copyright = '2014, Mark Basham'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.

from savu.version import __version__

# The short X.Y version.
version = __version__
# The full version, including alpha/beta/rc tags.
release = __version__

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
#exclude_patterns = ['_templates', '', '../../savu/test',
#                    '../../savu/core/transports/dist_array_transport.py',
#                    'setup.py', 'install']
exclude_patterns = ['api_plugin/savu.test*', 'api_plugin/setup*']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
add_module_names = False

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = ['savu.']


# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = ["_themes", ]

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = 'files_and_images/Savu_black_square_downsample2.png'
file_path =  os.path.dirname(os.path.realpath(__file__)).split('/doc/')[0]
html_logo = file_path + '/doc/source/files_and_images/logo_downsample.png'

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'Savudoc'


# -- Options for LaTeX output --------------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.
#'preamble': '',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
  ('index', 'Savu.tex', 'Savu Documentation',
   'Mark Basham', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True


# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'savu', 'Savu Documentation',
     ['Mark Basham'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False


# -- Options for Texinfo output ------------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        "index",
        "Savu",
        "Savu Documentation",
        "Mark Basham",
        "Savu",
        "One line description of project.",
        "Miscellaneous",
    ),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {"http://docs.python.org/": None}

def rstjinja(app, docname, source):
    """
    Render the pages as jinja templates
    """
    # Make sure we're outputting HTML
    if app.builder.format != 'html':
        return
    src = source[0]
    rendered = app.builder.templates.render_string(
        src, app.config.html_context
    )
    source[0] = rendered

def setup(app):
    # General width and navigation bar format
    app.add_css_file("css/general.css")
    # Style for plugin template pages
    app.add_css_file("css/plugin_template.css")
    app.add_css_file("css/plugin_template_download.css")
    app.connect("source-read", rstjinja)