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from savu.plugins.plugin_tools import PluginTools |
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class BaseTomophantomLoaderTools(PluginTools): |
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"""A hdf5 dataset of a specified size is created at runtime using Tomophantom |
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to generate synthetic data , saved with relevant meta_data to a NeXus |
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file, and used as input. It recreates the behaviour of the nxtomo loader |
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but with synthetic data. The input file path passed to Savu will be ignored |
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(use a dummy). |
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""" |
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def define_parameters(self): |
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""" |
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proj_data_dims: |
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visibility: basic |
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dtype: [list[float], list[]] |
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description: A list specifiying the sizes of dimensions of the generated 3D \ |
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projection data in the following format [Angles, DetectorsY, DetectorsX]. |
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default: [] |
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axis_labels: |
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visibility: basic |
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dtype: [list[],list[str]] |
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description: "A list of the axis labels to be associated |
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with each dimension, of the form ['name1.unit1', 'name2.unit2',...]" |
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default: [] |
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tomo_model: |
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visibility: basic |
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dtype: int |
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description: Select a model number from the library (see TomoPhantom dat files). |
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default: 11 |
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patterns: |
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visibility: hidden |
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dtype: [list[],list[str]] |
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description: "A list of data access patterns e.g. |
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[SINOGRAM.0c.1s.2c, PROJECTION.0s.1c.2s], where |
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'c' and 's' represent core and slice dimensions |
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respectively and every dimension must be |
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specified." |
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default: [] |
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""" |
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def citation(self): |
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""" |
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TomoPhantom is a software package to generate 2D-4D |
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analytical phantoms and their Radon transforms for various |
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testing purposes. |
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bibtex: |
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@article{kazantsev2018tomophantom, |
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title={TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks}, |
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author={Kazantsev, Daniil and Pickalov, Valery and Nagella, Srikanth and Pasca, Edoardo and Withers, Philip J}, |
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journal={SoftwareX}, |
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volume={7}, |
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pages={150--155}, |
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year={2018}, |
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publisher={Elsevier} |
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} |
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endnote: |
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%0 Journal Article |
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%T TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks |
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%A Kazantsev, Daniil |
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%A Pickalov, Valery |
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%A Nagella, Srikanth |
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%A Pasca, Edoardo |
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%A Withers, Philip J |
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%J SoftwareX |
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%V 7 |
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%P 150-155 |
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%@ 2352-7110 |
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%D 2018 |
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%I Elsevier |
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doi: "10.1016/j.softx.2018.05.003" |
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""" |
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DiamondLightSource /
Savu
