DiamondLightSource /
Savu
| @@ 91-108 (lines=18) @@ | ||
| 88 | nxs_entry.attrs['signal'] = 'data' |
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| 89 | return nxs_entry |
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| 90 | ||
| 91 | def __add_nxs_data(self, nxs_file, nxs_entry, link, group_name, data): |
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| 92 | data_entry = nxs_entry.name + '/data' |
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| 93 | # output file path |
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| 94 | h5file = data.backing_file.filename |
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| 95 | ||
| 96 | if link == 'input_data': |
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| 97 | dataset = self.__is_h5dataset(data) |
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| 98 | if dataset: |
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| 99 | nxs_file[data_entry] = \ |
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| 100 | h5py.ExternalLink(os.path.abspath(h5file), dataset.name) |
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| 101 | else: |
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| 102 | # entry path in output file path |
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| 103 | m_data = self.exp.meta_data.get |
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| 104 | if not (link == 'intermediate' and |
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| 105 | m_data('inter_path') != m_data('out_path')): |
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| 106 | h5file = h5file.split(m_data('out_folder') + '/')[-1] |
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| 107 | nxs_file[data_entry] = \ |
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| 108 | h5py.ExternalLink(h5file, group_name + '/data') |
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| 109 | ||
| 110 | def __is_h5dataset(self, data): |
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| 111 | if isinstance(data.data, h5py.Dataset): |
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| @@ 367-384 (lines=18) @@ | ||
| 364 | nxs_entry.attrs['signal'] = 'data' |
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| 365 | return nxs_entry |
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| 366 | ||
| 367 | def __add_nxs_data(self, nxs_file, nxs_entry, link, group_name, data): |
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| 368 | data_entry = nxs_entry.name + '/data' |
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| 369 | # output file path |
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| 370 | h5file = data.backing_file.filename |
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| 371 | ||
| 372 | if link == 'input_data': |
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| 373 | dataset = self.__is_h5dataset(data) |
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| 374 | if dataset: |
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| 375 | nxs_file[data_entry] = \ |
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| 376 | h5py.ExternalLink(os.path.abspath(h5file), dataset.name) |
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| 377 | else: |
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| 378 | # entry path in output file path |
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| 379 | m_data = self.exp.meta_data.get |
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| 380 | if not (link == 'intermediate' and |
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| 381 | m_data('inter_path') != m_data('out_path')): |
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| 382 | h5file = h5file.split(m_data('out_folder') + '/')[-1] |
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| 383 | nxs_file[data_entry] = \ |
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| 384 | h5py.ExternalLink(h5file, group_name + '/data') |
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| 385 | ||
