View GitHub Repository DICOMTransit

Schedule Inspection
Subscribe
Passed
Branch — DICOMAnonimization (c59297)
by Yang
02:05
created

file_operation.recursive_list_files()   A

↳ Parent: file_operation

Complexity

Conditions 3

Size

Total Lines 15
Code Lines 7

Duplication

Lines 0
Ratio 0 %

Importance

Changes 0
Metric Value
cc 3
eloc 7
nop 1
dl 0
loc 15
rs 10
c 0
b 0
f 0
1 
import time
2 
import os
3 
import logging
4 
import sys
5 

            


            
                                                                        
                            
            
                                    
            
            

                
                    6
                

                                    
                                                    
                
                
                
def recursive_list_files(root_dicom_path):

            


            
                                                                        
                            
            
                                    
            
            

                
                    7
                

                                    
                                                    
                
                
                
    """

            


            
                                                                        
                            
            
                                    
            
            

                
                    8
                

                                    
                                                    
                
                
                
    load all the files, validate and then pass to decompress or anonimize.

            


            
                                                                        
                            
            
                                    
            
            

                
                    9
                

                                    
                                                    
                
                
                
    :param path:

            


            
                                                                        
                            
            
                                    
            
            

                
                    10
                

                                    
                                                    
                
                
                
    :return:

            


            
                                                                        
                            
            
                                    
            
            

                
                    11
                

                                    
                                                    
                
                
                
    """

            


            
                                                                        
                            
            
                                    
            
            

                
                    12
                

                                    
                                                    
                
                
                
    global file_list

            


            
                                                                        
                            
            
                                    
            
            

                
                    13
                

                                    
                                                    
                
                
                
    file_list = []

            


            
                                                                        
                            
            
                                    
            
            

                
                    14
                

                                    
                                                    
                
                
                

            


            
                                                                        
                            
            
                                    
            
            

                
                    15
                

                                    
                                                    
                
                
                
    for root, directories, filenames in os.walk(root_dicom_path):

            


            
                                                                        
                            
            
                                    
            
            

                
                    16
                

                                    
                                                    
                
                
                
        #for directory in directories:

            


            
                                                                        
                            
            
                                    
            
            

                
                    17
                

                                    
                                                    
                
                
                
            #file_list.append(os.path.join(root, directory))

            


            
                                                                        
                            
            
                                    
            
            

                
                    18
                

                                    
                                                    
                
                
                
        for filename in filenames:

            


            
                                                                        
                            
            
                                    
            
            

                
                    19
                

                                    
                                                    
                
                
                
            file_list.append(os.path.join(root,filename))

            


            
                                                                        
                            
            
                                    
            
            

                
                    20
                

                                    
                                                    
                
                
                
    return file_list

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    21
                

                                    
                                                    
                
                
                

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    22
                

                                    
                                                    
                
                
                
def get_file_name(path):

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    23
                

                                    
                                                    
                
                
                
    file_name = os.path.basename(path)

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    24
                

                                    
                                                    
                
                
                
    return file_name

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    25
                

                                    
                                                    
                
                
                

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    26
                

                                    
                                                    
                
                
                
def make_flat_folder_structure():

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    27
                

                                    
                                                    
                
                
                
    return

            


            
                                                                                                            
                            
            
                                    
            
            

                
                    28
                

                                    
                                                    
                
                
                

            


            
                                                                                                            
                                                                
            
                                    
            
            

                
                    29
                

                                    
                                                    
                
                
                
def zip_with_name(path, name):

            


            
                                                        
            
                                    
            
            

                
                    30
                

                                    
                                                    
                
                
                
    return