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<?php |
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// This file is part of BOINC. |
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// https://boinc.berkeley.edu |
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// Copyright (C) 2024 University of California |
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// |
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// BOINC is free software; you can redistribute it and/or modify it |
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// under the terms of the GNU Lesser General Public License |
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// as published by the Free Software Foundation, |
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// either version 3 of the License, or (at your option) any later version. |
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// |
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// BOINC is distributed in the hope that it will be useful, |
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// but WITHOUT ANY WARRANTY; without even the implied warranty of |
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// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
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// See the GNU Lesser General Public License for more details. |
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// |
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// You should have received a copy of the GNU Lesser General Public License |
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// along with BOINC. If not, see <http://www.gnu.org/licenses/>. |
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// web interface for submitting BUDA jobs |
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require_once('../inc/util.inc'); |
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require_once('../inc/submit_util.inc'); |
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require_once('../inc/sandbox.inc'); |
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require_once('../inc/buda.inc'); |
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require_once('../inc/kw_prefs.inc'); |
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display_errors(); |
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function submit_form($user) { |
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$sbitems_zip = sandbox_select_items($user, '/.zip$/'); |
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if (!$sbitems_zip) { |
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error_page("No .zip files in your sandbox."); |
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} |
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$app = get_str('app'); |
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if (!is_valid_filename($app)) die('bad arg'); |
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$desc = "<br><small> |
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A zip file with one directory per job. |
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Each directory contains the input file(s) for that job |
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and an optional file <code>cmdline</code> |
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containing command-line arguments. |
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<a href=https://github.com/BOINC/boinc/wiki/BUDA-job-submission>Details</a></small>. |
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"; |
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page_head("BUDA: Submit jobs to $app"); |
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form_start('buda_submit.php'); |
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form_input_hidden('action', 'submit'); |
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form_input_hidden('app', $app); |
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form_select("Batch zip file $desc", 'batch_file', $sbitems_zip); |
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form_input_text( |
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'Command-line arguments<br><small>Passed to all jobs in the batch</small>', |
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'cmdline' |
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); |
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form_input_text( |
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'Max job runtime (days) on a typical (4.3 GFLOPS) computer. |
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<br><small> |
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The runtime limit will be scaled for faster/slower computers. |
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<br> |
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Jobs that reach this limit will be aborted. |
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</small>' |
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, |
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'max_runtime_days', 1 |
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); |
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form_input_text( |
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'Expected job runtime (days) on a typical (4.3 GFLOPS) computer. |
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<br><small> |
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This determines how many jobs are sent to each host, |
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and how "fraction done" is computed. |
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</small> |
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', |
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'exp_runtime_days', .5 |
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); |
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form_checkbox( |
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"Enable debugging output <br><small>Write Docker commands and output to stderr. Not recommended for long-running jobs.</small>.", |
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'wrapper_verbose' |
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); |
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form_submit('OK'); |
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form_end(); |
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page_tail(); |
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} |
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// unzip batch file into a temp dir; return dir name |
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// |
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function unzip_batch_file($user, $batch_file) { |
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@mkdir("../../buda_batches"); |
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for ($i=0; $i<1000; $i++) { |
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$batch_dir = "../../buda_batches/$i"; |
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$batch_dir_name = $i; |
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$ret = @mkdir($batch_dir); |
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if ($ret) break; |
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} |
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if (!$ret) error_page("can't create batch dir"); |
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$sb_dir = sandbox_dir($user); |
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if (!file_exists("$sb_dir/$batch_file")) { |
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error_page("no batch file $batch_file"); |
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} |
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system("cd $batch_dir; unzip $sb_dir/$batch_file > /dev/null", $ret); |
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if ($ret) { |
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error_page("unzip error: $ret"); |
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} |
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return $batch_dir_name; |
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} |
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// Scan a batch dir. |
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// Check its validity: |
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// - optional dir 'shared_input_files' has shared input files |
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// - other dirs (job dirs) can have only remaining infiles and possibly cmdline |
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// |
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// Return a structure describing its contents, and the md5/size of files |
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// |
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function parse_batch_dir($batch_dir, $app_desc) { |
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$input_files = $app_desc->input_file_names; |
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sort($input_files); |
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$shared_files = []; |
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$shared_file_infos = []; |
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if (is_dir("$batch_dir/shared_input_files")) { |
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foreach (scandir("$batch_dir/shared_input_files") as $fname) { |
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if ($fname[0] == '.') continue; |
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if (!in_array($fname, $input_files)) { |
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error_page("$fname is not an input file name"); |
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} |
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$shared_files[] = $fname; |
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$shared_file_infos[] = get_file_info("$batch_dir/shared_input_files/$fname"); |
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} |
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} |
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$unshared_files = array_diff($input_files, $shared_files); |
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sort($unshared_files); |
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$jobs = []; |
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foreach (scandir($batch_dir) as $fname) { |
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if ($fname[0] == '.') continue; |
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if ($fname == 'shared_input_files') continue; |
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if (!is_dir("$batch_dir/$fname")) { |
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error_page("$batch_dir/$fname is not a directory"); |
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} |
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$job_files = []; |
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$cmdline = ''; |
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foreach(scandir("$batch_dir/$fname") as $f2) { |
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if ($f2[0] == '.') continue; |
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if ($f2 == 'cmdline') { |
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$cmdline = trim(file_get_contents("$batch_dir/$fname/cmdline")); |
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continue; |
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} |
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if (!in_array($f2, $unshared_files)) { |
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error_page("$fname/$f2 is not an input file name"); |
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} |
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$job_files[] = $f2; |
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} |
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if (array_values($job_files) != array_values($unshared_files)) { |
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error_page("$fname doesn't have all input files"); |
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} |
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if (!$cmdline && !$job_files) { |
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error_page("job $f2 has no cmdline and no input files"); |
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} |
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$file_infos = []; |
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foreach ($unshared_files as $f2) { |
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$file_infos[] = get_file_info("$batch_dir/$fname/$f2"); |
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} |
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$job = new StdClass; |
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$job->dir = $fname; |
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$job->cmdline = $cmdline; |
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$job->file_infos = $file_infos; |
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$jobs[] = $job; |
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} |
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$batch_desc = new StdClass; |
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$batch_desc->shared_files = $shared_files; |
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$batch_desc->shared_file_infos = $shared_file_infos; |
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$batch_desc->unshared_files = $unshared_files; |
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$batch_desc->jobs = $jobs; |
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return $batch_desc; |
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} |
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function create_batch($user, $njobs, $app) { |
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global $buda_boinc_app; |
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$now = time(); |
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$batch_name = sprintf('buda_%d_%d', $user->id, $now); |
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$description = "$app"; |
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$batch_id = BoincBatch::insert(sprintf( |
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"(user_id, create_time, logical_start_time, logical_end_time, est_completion_time, njobs, fraction_done, nerror_jobs, state, completion_time, credit_estimate, credit_canonical, credit_total, name, app_id, project_state, description, expire_time) values (%d, %d, 0, 0, 0, %d, 0, 0, %d, 0, 0, 0, 0, '%s', %d, 0, '%s', 0)", |
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$user->id, $now, $njobs, BATCH_STATE_INIT, $batch_name, $buda_boinc_app->id, |
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$description |
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)); |
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return BoincBatch::lookup_id($batch_id); |
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} |
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function stage_input_files($batch_dir, $batch_desc, $batch_id) { |
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$n = count($batch_desc->shared_files); |
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$batch_desc->shared_files_phys_names = []; |
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for ($i=0; $i<$n; $i++) { |
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$path = sprintf('%s/%s', $batch_dir, $batch_desc->shared_files[$i]); |
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[$md5, $size] = $batch_desc->shared_file_infos[$i]; |
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$phys_name = sprintf('batch_%d_%s', $batch_id, $md5); |
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stage_file_aux($path, $md5, $size, $phys_name); |
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$batch_desc->shared_files_phys_names[] = $phys_name; |
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} |
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foreach ($batch_desc->jobs as $job) { |
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$n = count($batch_desc->unshared_files); |
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$job->phys_names = []; |
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for ($i=0; $i<$n; $i++) { |
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$path = sprintf('%s/%s/%s', |
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$batch_dir, $job->dir, $batch_desc->unshared_files[$i] |
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); |
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[$md5, $size] = $job->file_infos[$i]; |
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$phys_name = sprintf('batch_%d_%s', $batch_id, $md5); |
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stage_file_aux($path, $md5, $size, $phys_name); |
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$job->phys_names[] = $phys_name; |
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} |
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} |
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} |
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// run bin/create_work to create the jobs. |
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// Use --stdin, where each job is described by a line |
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// |
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function create_jobs( |
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$user, $app, $app_desc, $batch_desc, $batch_id, $batch_dir_name, |
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$wrapper_verbose, $cmdline, $max_fpops, $exp_fpops, |
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$keywords |
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) { |
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global $buda_boinc_app; |
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// make per-job lines to pass as stdin |
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// |
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$job_cmds = ''; |
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foreach ($batch_desc->jobs as $job) { |
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$job_cmd = sprintf('--wu_name batch_%d__job_%s', $batch_id, $job->dir); |
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if ($job->cmdline) { |
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$job_cmd .= sprintf(' --command_line "%s"', $job->cmdline); |
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} |
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foreach ($batch_desc->shared_files_phys_names as $x) { |
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$job_cmd .= " $x"; |
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} |
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foreach ($job->phys_names as $x) { |
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$job_cmd .= " $x"; |
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} |
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$job_cmds .= "$job_cmd\n"; |
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} |
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$wrapper_cmdline = sprintf('"%s %s"', |
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$wrapper_verbose?'--verbose':'', |
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$cmdline |
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); |
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$cmd = sprintf( |
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'cd ../..; bin/create_work --appname %s --sub_appname "%s" --batch %d --stdin --command_line %s --wu_template %s --result_template %s --rsc_fpops_bound %f --rsc_fpops_est %f', |
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$buda_boinc_app->name, |
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$app_desc->long_name, |
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$batch_id, |
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$wrapper_cmdline, |
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"buda_apps/$app/template_in", |
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"buda_apps/$app/template_out", |
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$max_fpops, $exp_fpops |
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); |
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if ($keywords) { |
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$cmd .= " --keywords '$keywords'"; |
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} |
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if ($user->seti_id) { |
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$cmd .= " --target_user $user->id "; |
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} |
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$cmd .= sprintf(' > %s 2<&1', "buda_batches/errfile"); |
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$h = popen($cmd, "w"); |
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if (!$h) error_page('create_work launch failed'); |
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fwrite($h, $job_cmds); |
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$ret = pclose($h); |
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if ($ret) { |
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echo "<pre>create_work failed.\n"; |
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echo "command: $cmd\n\n"; |
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echo "job lines:\n$job_cmds\n\n"; |
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echo "error file:\n"; |
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readfile("../../buda_batches/errfile"); |
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exit; |
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} |
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} |
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274
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function handle_submit($user) { |
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global $buda_root; |
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276
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277
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$app = get_str('app'); |
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if (!is_valid_filename($app)) die('bad arg'); |
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$batch_file = get_str('batch_file'); |
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if (!is_valid_filename($batch_file)) die('bad arg'); |
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$wrapper_verbose = get_str('wrapper_verbose', true); |
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$cmdline = get_str('cmdline'); |
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$max_runtime_days = get_str('max_runtime_days'); |
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if (!is_numeric($max_runtime_days)) error_page('bad runtime limit'); |
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$max_runtime_days = (double)$max_runtime_days; |
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287
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if ($max_runtime_days <= 0) error_page('bad runtime limit'); |
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288
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if ($max_runtime_days > 100) error_page('bad runtime limit'); |
|
289
|
|
|
$max_fpops = $max_runtime_days * 4.3e9 * 86400; |
|
290
|
|
|
|
|
291
|
|
|
$exp_runtime_days = get_str('exp_runtime_days'); |
|
292
|
|
|
if (!is_numeric($exp_runtime_days)) error_page('bad expected runtime'); |
|
293
|
|
|
$exp_runtime_days = (double)$exp_runtime_days; |
|
294
|
|
|
if ($exp_runtime_days <= 0) error_page('bad expected runtime'); |
|
295
|
|
|
if ($exp_runtime_days > 100) error_page('bad expected runtime'); |
|
296
|
|
|
if ($exp_runtime_days > $max_runtime_days) { |
|
297
|
|
|
error_page('exp must be < max runtime'); |
|
298
|
|
|
} |
|
299
|
|
|
$exp_fpops = $exp_runtime_days * 4.3e9 * 86400; |
|
300
|
|
|
|
|
301
|
|
|
$app_desc = get_buda_app_desc($app); |
|
302
|
|
|
|
|
303
|
|
|
// unzip batch file into temp dir |
|
304
|
|
|
$batch_dir_name = unzip_batch_file($user, $batch_file); |
|
305
|
|
|
$batch_dir = "../../buda_batches/$batch_dir_name"; |
|
306
|
|
|
|
|
307
|
|
|
// scan batch dir; validate and return struct |
|
308
|
|
|
$batch_desc = parse_batch_dir($batch_dir, $app_desc); |
|
309
|
|
|
|
|
310
|
|
|
if (!$batch_desc->jobs) { |
|
311
|
|
|
system("rm -rf $batch_dir"); |
|
312
|
|
|
page_head("No jobs created"); |
|
313
|
|
|
echo " |
|
314
|
|
|
Your batch file (.zip) did not specify any jobs. |
|
315
|
|
|
See <a href=https://github.com/BOINC/boinc/wiki/BUDA-job-submission#batch-files>Instructions for creating batch files</a>. |
|
316
|
|
|
"; |
|
317
|
|
|
page_tail(); |
|
318
|
|
|
return; |
|
319
|
|
|
} |
|
320
|
|
|
if (count($batch_desc->jobs > 10 && $user->seti_id) { |
|
|
|
|
|
|
321
|
|
|
system("rm -rf $batch_dir"); |
|
|
|
|
|
|
322
|
|
|
error_page( |
|
323
|
|
|
"Batches with > 10 jobs are not allowed if 'use only my computers' is set" |
|
324
|
|
|
); |
|
325
|
|
|
} |
|
326
|
|
|
|
|
327
|
|
|
$batch = create_batch($user, count($batch_desc->jobs), $app); |
|
328
|
|
|
|
|
329
|
|
|
// stage input files and record the physical names |
|
330
|
|
|
// |
|
331
|
|
|
stage_input_files($batch_dir, $batch_desc, $batch->id); |
|
332
|
|
|
|
|
333
|
|
|
// get job keywords: user keywords plus BUDA app keywords |
|
334
|
|
|
// |
|
335
|
|
|
[$yes, $no] = read_kw_prefs($user); |
|
336
|
|
|
$keywords = array_merge($yes, $app_desc->sci_kw); |
|
337
|
|
|
$keywords = array_unique($keywords); |
|
338
|
|
|
$keywords = implode(' ', $keywords); |
|
339
|
|
|
|
|
340
|
|
|
create_jobs( |
|
341
|
|
|
$user, $app, $app_desc, $batch_desc, $batch->id, $batch_dir_name, |
|
342
|
|
|
$wrapper_verbose, $cmdline, $max_fpops, $exp_fpops, $keywords |
|
343
|
|
|
); |
|
344
|
|
|
|
|
345
|
|
|
// mark batch as in progress |
|
346
|
|
|
// |
|
347
|
|
|
$batch->update(sprintf('state=%d', BATCH_STATE_IN_PROGRESS)); |
|
348
|
|
|
|
|
349
|
|
|
// clean up batch dir |
|
350
|
|
|
// |
|
351
|
|
|
system("rm -rf $batch_dir"); |
|
352
|
|
|
|
|
353
|
|
|
header("Location: submit.php?action=query_batch&batch_id=$batch->id"); |
|
354
|
|
|
} |
|
355
|
|
|
|
|
356
|
|
|
function show_list() { |
|
357
|
|
|
page_head('BUDA job submission'); |
|
358
|
|
|
$apps = get_buda_apps(); |
|
359
|
|
|
echo 'Select app:<p><br>'; |
|
360
|
|
|
foreach ($apps as $app) { |
|
361
|
|
|
$desc = get_buda_app_desc($app); |
|
362
|
|
|
echo sprintf('<p><a href=buda_submit.php?action=form&app=%s>%s</a>', |
|
363
|
|
|
$app, $desc->long_name |
|
364
|
|
|
); |
|
365
|
|
|
} |
|
366
|
|
|
page_tail(); |
|
367
|
|
|
} |
|
368
|
|
|
|
|
369
|
|
|
$user = get_logged_in_user(); |
|
370
|
|
|
$buda_boinc_app = BoincApp::lookup("name='buda'"); |
|
371
|
|
|
if (!$buda_boinc_app) error_page('no buda app'); |
|
372
|
|
|
if (!has_submit_access($user, $buda_boinc_app->id)) { |
|
373
|
|
|
error_page('no access'); |
|
374
|
|
|
} |
|
375
|
|
|
$action = get_str('action', true); |
|
376
|
|
|
if ($action == 'submit') { |
|
377
|
|
|
handle_submit($user); |
|
378
|
|
|
} else if ($action == 'form') { |
|
379
|
|
|
submit_form($user); |
|
380
|
|
|
} else { |
|
381
|
|
|
show_list(); |
|
382
|
|
|
} |
|
383
|
|
|
|
|
384
|
|
|
?> |
|
385
|
|
|
|
BOINC /
boinc
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