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1  <?php 

2  
3  declare(strict_types=1); 

4  
5  namespace Phpml\Helper\Optimizer; 

6  
7  use Closure; 

8  
9  /** 

10  * Conjugate Gradient method to solve a nonlinear f(x) with respect to unknown x 

11  * See https://en.wikipedia.org/wiki/Nonlinear_conjugate_gradient_method) 

12  * 

13  * The method applied below is explained in the below document in a practical manner 

14  *  http://web.cs.iastate.edu/~cs577/handouts/conjugategradient.pdf 

15  * 

16  * However it is compliant with the general Conjugate Gradient method with 

17  * FletcherReeves update method. Note that, the f(x) is assumed to be onedimensional 

18  * and one gradient is utilized for all dimensions in the given data. 

19  */ 

20  class ConjugateGradient extends GD 

21  { 

22  public function runOptimization(array $samples, array $targets, Closure $gradientCb): array 

23  { 

24  $this>samples = $samples; 

25  $this>targets = $targets; 

26  $this>gradientCb = $gradientCb; 

27  $this>sampleCount = count($samples); 

28  $this>costValues = []; 

29  
30  $d = MP::muls($this>gradient($this>theta), 1); 

31  
32  for ($i = 0; $i < $this>maxIterations; ++$i) { 

33  // Obtain α that minimizes f(θ + α.d) 

34  $alpha = $this>getAlpha($d); 

35  
36  // θ(k+1) = θ(k) + α.d 

37  $thetaNew = $this>getNewTheta($alpha, $d); 

38  
39  // β = ∇f(x(k+1))² ∕ ∇f(x(k))² 

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40  $beta = $this>getBeta($thetaNew); 

41  
42  // d(k+1) =–∇f(x(k+1)) + β(k).d(k) 

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Sometimes obsolete code just ends up commented out instead of removed. In this case it is better to remove the code once you have checked you do not need it. The code might also have been commented out for debugging purposes. In this case it is vital that someone uncomments it again or your project may behave in very unexpected ways in production. This check looks for comments that seem to be mostly valid code and reports them.
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43  $d = $this>getNewDirection($thetaNew, $beta, $d); 

44  
45  // Save values for the next iteration 

46  $oldTheta = $this>theta; 

47  $this>costValues[] = $this>cost($thetaNew); 

48  
49  $this>theta = $thetaNew; 

50  if ($this>enableEarlyStop && $this>earlyStop($oldTheta)) { 

51  break; 

52  } 

53  } 

54  
55  $this>clear(); 

56  
57  return $this>theta; 

58  } 

59  
60  /** 

61  * Executes the callback function for the problem and returns 

62  * sum of the gradient for all samples & targets. 

63  */ 

64  protected function gradient(array $theta): array 

65  { 

66  [, $updates, $penalty] = parent::gradient($theta); 

67  
68  // Calculate gradient for each dimension 

69  $gradient = []; 

70  for ($i = 0; $i <= $this>dimensions; ++$i) { 

71  if ($i === 0) { 

72  $gradient[$i] = array_sum($updates); 

73  } else { 

74  $col = array_column($this>samples, $i  1); 

75  $error = 0; 

76  foreach ($col as $index => $val) { 

77  $error += $val * $updates[$index]; 

78  } 

79  
80  $gradient[$i] = $error + $penalty * $theta[$i]; 

81  } 

82  } 

83  
84  return $gradient; 

85  } 

86  
87  /** 

88  * Returns the value of f(x) for given solution 

89  */ 

90  protected function cost(array $theta): float 

91  { 

92  [$cost] = parent::gradient($theta); 

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It seems like you call parent on a different method (
gradient() instead of cost() ). Are you sure this is correct? If so, you might want to change this to $this>gradient() .
This check looks for a call to a parent method whose name is different than the method from which it is called. Consider the following code: class Daddy
{
protected function getFirstName()
{
return "Eidur";
}
protected function getSurName()
{
return "Gudjohnsen";
}
}
class Son
{
public function getFirstName()
{
return parent::getSurname();
}
}
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93  
94  return array_sum($cost) / $this>sampleCount; 

95  } 

96  
97  /** 

98  * Calculates alpha that minimizes the function f(θ + α.d) 

99  * by performing a line search that does not rely upon the derivation. 

100  * 

101  * There are several alternatives for this function. For now, we 

102  * prefer a method inspired from the bisection method for its simplicity. 

103  * This algorithm attempts to find an optimum alpha value between 0.0001 and 0.01 

104  * 

105  * Algorithm as follows: 

106  * a) Probe a small alpha (0.0001) and calculate cost function 

107  * b) Probe a larger alpha (0.01) and calculate cost function 

108  * b1) If cost function decreases, continue enlarging alpha 

109  * b2) If cost function increases, take the midpoint and try again 

110  */ 

111  protected function getAlpha(array $d): float 

112  { 

113  $small = MP::muls($d, 0.0001); 

114  $large = MP::muls($d, 0.01); 

115  
116  // Obtain θ + α.d for two initial values, x0 and x1 

117  $x0 = MP::add($this>theta, $small); 

118  $x1 = MP::add($this>theta, $large); 

119  
120  $epsilon = 0.0001; 

121  $iteration = 0; 

122  do { 

123  $fx1 = $this>cost($x1); 

124  $fx0 = $this>cost($x0); 

125  
126  // If the difference between two values is small enough 

127  // then break the loop 

128  if (abs($fx1  $fx0) <= $epsilon) { 

129  break; 

130  } 

131  
132  if ($fx1 < $fx0) { 

133  $x0 = $x1; 

134  $x1 = MP::adds($x1, 0.01); // Enlarge second 

135  } else { 

136  $x1 = MP::divs(MP::add($x1, $x0), 2.0); 

137  } // Get to the midpoint 

138  
139  $error = $fx1 / $this>dimensions; 

140  } while ($error <= $epsilon  $iteration++ < 10); 

141  
142  // Return α = θ / d 

143  // For accuracy, choose a dimension which maximize d[i] 

144  $imax = 0; 

145  for ($i = 1; $i <= $this>dimensions; ++$i) { 

146  if (abs($d[$i]) > abs($d[$imax])) { 

147  $imax = $i; 

148  } 

149  } 

150  
151  if ($d[$imax] == 0) { 

152  return $x1[$imax]  $this>theta[$imax]; 

153  } 

154  
155  return ($x1[$imax]  $this>theta[$imax]) / $d[$imax]; 

156  } 

157  
158  /** 

159  * Calculates new set of solutions with given alpha (for each θ(k)) and 

160  * gradient direction. 

161  * 

162  * θ(k+1) = θ(k) + α.d 

163  */ 

164  protected function getNewTheta(float $alpha, array $d): array 

165  { 

166  return MP::add($this>theta, MP::muls($d, $alpha)); 

167  } 

168  
169  /** 

170  * Calculates new beta (β) for given set of solutions by using 

171  * Fletcher–Reeves method. 

172  * 

173  * β = f(x(k+1))² ∕ f(x(k))² 

174  * 

175  * See: 

176  * R. Fletcher and C. M. Reeves, "Function minimization by conjugate gradients", Comput. J. 7 (1964), 149–154. 

177  */ 

178  protected function getBeta(array $newTheta): float 

179  { 

180  $gNew = $this>gradient($newTheta); 

181  $gOld = $this>gradient($this>theta); 

182  $dNew = 0; 

183  $dOld = 1e100; 

184  for ($i = 0; $i <= $this>dimensions; ++$i) { 

185  $dNew += $gNew[$i] ** 2; 

186  $dOld += $gOld[$i] ** 2; 

187  } 

188  
189  return $dNew / $dOld; 

190  } 

191  
192  /** 

193  * Calculates the new conjugate direction 

194  * 

195  * d(k+1) =–∇f(x(k+1)) + β(k).d(k) 

196  */ 

197  protected function getNewDirection(array $theta, float $beta, array $d): array 

198  { 

199  $grad = $this>gradient($theta); 

200  
201  return MP::add(MP::muls($grad, 1), MP::muls($d, $beta)); 

202  } 

203  } 

204  
205  /** 

206  * Handles elementwise vector operations between vectorvector 

207  * and vectorscalar variables 

208  */ 

209  class MP 

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210  { 

211  /** 

212  * Elementwise <b>multiplication</b> of two vectors of the same size 

213  */ 

214  public static function mul(array $m1, array $m2): array 

215  { 

216  $res = []; 

217  foreach ($m1 as $i => $val) { 

218  $res[] = $val * $m2[$i]; 

219  } 

220  
221  return $res; 

222  } 

223  
224  /** 

225  * Elementwise <b>division</b> of two vectors of the same size 

226  */ 

227  public static function div(array $m1, array $m2): array 

228  { 

229  $res = []; 

230  foreach ($m1 as $i => $val) { 

231  $res[] = $val / $m2[$i]; 

232  } 

233  
234  return $res; 

235  } 

236  
237  /** 

238  * Elementwise <b>addition</b> of two vectors of the same size 

239  */ 

240  public static function add(array $m1, array $m2, int $mag = 1): array 

241  { 

242  $res = []; 

243  foreach ($m1 as $i => $val) { 

244  $res[] = $val + $mag * $m2[$i]; 

245  } 

246  
247  return $res; 

248  } 

249  
250  /** 

251  * Elementwise <b>subtraction</b> of two vectors of the same size 

252  */ 

253  public static function sub(array $m1, array $m2): array 

254  { 

255  return self::add($m1, $m2, 1); 

256  } 

257  
258  /** 

259  * Elementwise <b>multiplication</b> of a vector with a scalar 

260  */ 

261  public static function muls(array $m1, float $m2): array 

262  { 

263  $res = []; 

264  foreach ($m1 as $val) { 

265  $res[] = $val * $m2; 

266  } 

267  
268  return $res; 

269  } 

270  
271  /** 

272  * Elementwise <b>division</b> of a vector with a scalar 

273  */ 

274  public static function divs(array $m1, float $m2): array 

275  { 

276  $res = []; 

277  foreach ($m1 as $val) { 

278  $res[] = $val / ($m2 + 1e32); 

279  } 

280  
281  return $res; 

282  } 

283  
284  /** 

285  * Elementwise <b>addition</b> of a vector with a scalar 

286  */ 

287  public static function adds(array $m1, float $m2, int $mag = 1): array 

288  { 

289  $res = []; 

290  foreach ($m1 as $val) { 

291  $res[] = $val + $mag * $m2; 

292  } 

293  
294  return $res; 

295  } 

296  
297  /** 

298  * Elementwise <b>subtraction</b> of a vector with a scalar 

299  */ 

300  public static function subs(array $m1, float $m2): array 

301  { 

302  return self::adds($m1, $m2, 1); 

303  } 

304  } 

305 
Sometimes obsolete code just ends up commented out instead of removed. In this case it is better to remove the code once you have checked you do not need it.
The code might also have been commented out for debugging purposes. In this case it is vital that someone uncomments it again or your project may behave in very unexpected ways in production.
This check looks for comments that seem to be mostly valid code and reports them.