DiamondLightSource /
Savu
| @@ 129-146 (lines=18) @@ | ||
| 126 | nxs_entry.attrs['signal'] = 'data' |
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| 127 | return nxs_entry |
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| 128 | ||
| 129 | def __add_nxs_data(self, nxs_file, nxs_entry, link, group_name, data): |
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| 130 | data_entry = nxs_entry.name + '/data' |
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| 131 | # output file path |
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| 132 | h5file = data.backing_file.filename |
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| 133 | ||
| 134 | if link == 'input_data': |
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| 135 | dataset = self.__is_h5dataset(data) |
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| 136 | if dataset: |
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| 137 | nxs_file[data_entry] = \ |
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| 138 | h5py.ExternalLink(os.path.abspath(h5file), dataset.name) |
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| 139 | else: |
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| 140 | # entry path in output file path |
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| 141 | m_data = self.exp.meta_data.get |
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| 142 | if not (link == 'intermediate' and |
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| 143 | m_data('inter_path') != m_data('out_path')): |
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| 144 | h5file = h5file.split(m_data('out_folder') + '/')[-1] |
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| 145 | nxs_file[data_entry] = \ |
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| 146 | h5py.ExternalLink(h5file, group_name + '/data') |
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| 147 | ||
| 148 | def __is_h5dataset(self, data): |
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| 149 | if isinstance(data.data, h5py.Dataset): |
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| @@ 421-438 (lines=18) @@ | ||
| 418 | nxs_entry.attrs['signal'] = 'data' |
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| 419 | return nxs_entry |
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| 420 | ||
| 421 | def __add_nxs_data(self, nxs_file, nxs_entry, link, group_name, data): |
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| 422 | data_entry = nxs_entry.name + '/data' |
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| 423 | # output file path |
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| 424 | h5file = data.backing_file.filename |
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| 425 | ||
| 426 | if link == 'input_data': |
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| 427 | dataset = self.__is_h5dataset(data) |
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| 428 | if dataset: |
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| 429 | nxs_file[data_entry] = \ |
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| 430 | h5py.ExternalLink(os.path.abspath(h5file), dataset.name) |
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| 431 | else: |
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| 432 | # entry path in output file path |
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| 433 | m_data = self.exp.meta_data.get |
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| 434 | if not (link == 'intermediate' and |
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| 435 | m_data('inter_path') != m_data('out_path')): |
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| 436 | h5file = h5file.split(m_data('out_folder') + '/')[-1] |
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| 437 | nxs_file[data_entry] = \ |
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| 438 | h5py.ExternalLink(h5file, group_name + '/data') |
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| 439 | ||
